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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015800970.1_cds_XP_016472415.1_6428
CDS Infomation

[gene=LOC107794431] [db_xref=GeneID:107794431] [protein=vacuolar protein sorting-associated protein 53 A-like isoform X2] [protein_id=XP_016472415.1] [location=join(717..736,915..1075,1178..1319,1787..1850,5143..5328,5432..5473,6108..6212,6294..6353,6598..6675,7167..7274,7362..7427,7730..7807,7886..8019,8101..8194,8664..8726,9244..9312,9400..9495,10070..10372)] [gbkey=CDS]
Sequence

ATGCTTCTGCTTAAGTATTGCTTAGGCACAGGGAAGGAGACAGAAGAAAGTAATCTACTG
CAGCAGTTATCAGATGCATGCTTAGTTGTTGATGCTCTCGAACCTTCTGTTAGAGAAGAA
TTGGTGAAAAGTTTTTGTAATAGAGAGCTTACCTCGTACCAGCAGATTTTTGAAGGAGCA
GAACTAGCTAAGTTGGACAAGACTGAAAGAAGATATGCTTGGATCAAGCGTCGTCTAAGA
ACAAATGAGGAGATTTGGAAAATTTTCCCTCGTTCATGGCATGTCAATTATTTGCTTTGT
ATCCAGTTCTGCAAGTTGACAAGGTCTCAACTTGTGGAAATCCTTGTTAGTATGAAAGAA
AAGCCAGATGTTGCGACCTTGTTGATGGCTCTGCAGCGTACTTTGGAATTTGAAGAGGAG
TTAGCAGAGAAATTTGGTGGTGGGACCCGCAGTAAAGATGCTGTAGATGACAGTGAAGAA
ACAGAAAGGAGCGGAAACAAGAGCCAGACAGTTTCAGACATTCGGAAAAAGTATGAGAAA
AAGCTTGCTGCTCATGATGGTAGTCAACATGACGAACAAGATGGACAAAAAGATCCATCG
GTGCCGGGAGCTGGGTTCAATTTCCGAGGGATCATTTCATCGTGCTTTGAACCTCACTTG
TCAGTTTATGTAGAGCTGGAAGAGAAGACTCTTATGGACAGTTTGGAGAAAGAAATACTG
GAAGAGACATGGGAAATTGAGGAGGGAAGTCAGACTAATATTTTATCTAGCAGCATTAAG
GTCTTTGTAATCATCAGGAGGAGCTTGAAGCGATGCAGTGCTTTGACGAAAAACCAGACA
TTGTTTAATCTCTTTAAGGCATTTCAAAAAGTTCTTAAAGCTTATGCTACCAAGCTTTTC
TCTAGATTGCCAAAGGGTGGTACAGGAATTGTTGCAGCTGCCACAGGTATTGAAGGACAG
ATAAAGACATCGGACAAGGATGAAAGGGTGATCTGCTACATAGTAAACACTGCAGAGTAT
TGTCACAAAACGTGTGGTGAATTAGCAGATAATGTCTCAAAGATGATTGATGCTCAATTT
GCAGATAGAGTGGATATGTCTGAAGTACAGGATGAATTTTCAGCAGTTATTACAAAATCA
TTGATTACACTAGTGCACGGAATAGAAACAAAGTTTGACTCTGAGATGGCTGCAATGACT
CGTGTTCCATGGAGTACTCTCGAAAGTGTTGGTGATCAGTCCGAGTACGTCAATGGCATA
AATTCGATCCTTACCAGTAGCATTCCTGTGCTCGGAAGCCTTCTCTCTCCCATTTACTTC
CAATTCTTTTTGGATAAGATGCTTTTGGATACGCAAGCAGTAAAGACTATTTTGCTGGAA
ATTCCTTCTCTTGGAAAACAAACAGCAGGAGCTGCTAGCTATTCTAAATTTGTTAGTCGT
GAGATGAGCAAAGCAGAAGCATTATTGAAGGTCATACTATCTCCAATAGATTCTGTGGCA
GATACATACTGTGCACTGCTGCCAGAGGGAACACTTGCAGAGTTTCAGCGGCTTTTGGAG
CTTAAGGGCCTGAAAAAAGCTGATCAGCAGAGCATACTGGATGACTTCAACAAACGTGGG
TCAGGTATCTCTCAGTCGACCATTATGGCCCCTTCAGTTGTACCATCTGCTCCAAACACC
TCAATAGCACCGGCCATAACTAACGTAGCATCATCACCTGGGGCCATCACTTCAAGAGAA
GATGTGCTGACCAGAGCAGCTGCACTTGGAAGAGGTGCAGCTACTACTGGCTTTAAGAGA
TTCCTCGCTTTAACAGAAGCTGCAAAAGATCGCAAGGATGGACCATTCAGGAAGCTATTC
AATGGATAA

Peptide Sequence

PEP ID

XP_016472415.1
PEP Infomation

PREDICTED: vacuolar protein sorting-associated protein 53 A-like isoform X2 [Nicotiana tabacum]
Sequence

MLLLKYCLGTGKETEESNLLQQLSDACLVVDALEPSVREELVKSFCNRELTSYQQIFEGA
ELAKLDKTERRYAWIKRRLRTNEEIWKIFPRSWHVNYLLCIQFCKLTRSQLVEILVSMKE
KPDVATLLMALQRTLEFEEELAEKFGGGTRSKDAVDDSEETERSGNKSQTVSDIRKKYEK
KLAAHDGSQHDEQDGQKDPSVPGAGFNFRGIISSCFEPHLSVYVELEEKTLMDSLEKEIL
EETWEIEEGSQTNILSSSIKVFVIIRRSLKRCSALTKNQTLFNLFKAFQKVLKAYATKLF
SRLPKGGTGIVAAATGIEGQIKTSDKDERVICYIVNTAEYCHKTCGELADNVSKMIDAQF
ADRVDMSEVQDEFSAVITKSLITLVHGIETKFDSEMAAMTRVPWSTLESVGDQSEYVNGI
NSILTSSIPVLGSLLSPIYFQFFLDKMLLDTQAVKTILLEIPSLGKQTAGAASYSKFVSR
EMSKAEALLKVILSPIDSVADTYCALLPEGTLAEFQRLLELKGLKKADQQSILDDFNKRG
SGISQSTIMAPSVVPSAPNTSIAPAITNVASSPGAITSREDVLTRAAALGRGAATTGFKR
FLALTEAAKDRKDGPFRKLFNG

Transcript Sequence

Gene sequence data has not been registered.